If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ), 'gf_id' => 'HOM05D000739', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000739' ), 'data_identifier' => 'HOM05D000739', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000739', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07220' => 'bna', 'A03p11790' => 'bna', 'A03p26020' => 'bna', 'A03p59990' => 'bna', 'A03p60020' => 'bna', 'A04p06060' => 'bna', 'A04p21820' => 'bna', 'A07p19230' => 'bna', 'A07p26100' => 'bna', 'A07p26110' => 'bna', 'A09p46530' => 'bna', 'A09p54680' => 'bna', 'Aa31LG10G16550' => 'aar', 'Aa31LG1G28990' => 'aar', 'Aa31LG4G15490' => 'aar', 'Aa31LG5G22750' => 'aar', 'Aa31LG5G7430' => 'aar', 'Aa31LG9G4500' => 'aar', 'Aa31sc23G290' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1894' => 'aag', 'Actinidia07722' => 'ach', 'Actinidia11246' => 'ach', 'Actinidia19750' => 'ach', 'Actinidia21046' => 'ach', 'Actinidia21048' => 'ach', 'Actinidia24824' => 'ach', 'Actinidia33859' => 'ach', 'Ah.08g212280' => 'amhyb', 'Ah.08g213450' => 'amhyb', 'Ah.08g219130' => 'amhyb', 'Ah.15g093190' => 'amhyb', 'Ah.15g096860' => 'amhyb', 'AL4G23290' => 'aly', 'AL4G47230' => 'aly', 'AL5G25270' => 'aly', 'AL5G34440' => 'aly', 'AL5G45610' => 'aly', 'AL8G35720' => 'aly', 'Aqoxy2G02943_Aqoxy2G02942' => 'aox', 'Aqoxy4G02975_Aqoxy4G02976' => 'aox', 'Aqoxy4G03064_Aqoxy4G03065' => 'aox', 'Aqoxy5G00756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34YUZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6MQ181' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856I4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEC6TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8UX5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH9MY4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL0HTV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3EBPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4KFYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL25CR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TXZ48C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI6Y6V' => 'arhy', 'AT2G28760' => 'ath', 'AT2G47650' => 'ath', 'AT3G46440' => 'ath', 'AT3G53520' => 'ath', 'AT3G62830' => 'ath', 'AT5G59290' => 'ath', 'ATR0559G048' => 'atr', 'ATR0706G237' => 'atr', 'ATR0759G028' => 'atr', 'ATR0759G127' => 'atr', 'ATR1098G026' => 'atr', 'Atru.chr12.495' => 'acertr', 'Atru.chr3.3841' => 'acertr', 'Atru.chr4.2876' => 'acertr', 'Atru.chr5.1148' => 'acertr', 'Atru.chr8.2489' => 'acertr', 'AUR62001819' => 'cqu', 'AUR62008623' => 'cqu', 'AUR62009605' => 'cqu', 'AUR62033148' => 'cqu', 'AUR62040989' => 'cqu', 'AUR62042970' => 'cqu', 'BcaB01g00267' => 'bca', 'BcaB01g03163' => 'bca', 'BcaB01g04596' => 'bca', 'BcaB02g07317' => 'bca', 'BcaB02g08096' => 'bca', 'BcaB02g08523' => 'bca', 'BcaB02g08524' => 'bca', 'BcaB02g10199' => 'bca', 'BcaB05g22498' => 'bca', 'BcaB05g23499' => 'bca', 'BcaB06g29490' => 'bca', 'BcaC01g06532' => 'bca', 'BcaC02g06985' => 'bca', 'BcaC02g08140' => 'bca', 'BcaC02g09155' => 'bca', 'BcaC02g09156' => 'bca', 'BcaC02g10315' => 'bca', 'BcaC03g14022' => 'bca', 'BcaC06g35233' => 'bca', 'BcaC07g39713' => 'bca', 'BcaC07g39714' => 'bca', 'BcaC07g40755' => 'bca', 'BcaC07g40758' => 'bca', 'BcaC07g42736' => 'bca', 'BcaC08g45240' => 'bca', 'BcaC09g49742' => 'bca', 'BolC1t03280H' => 'bol', 'BolC2t07360H' => 'bol', 'BolC3t13832H' => 'bol', 'BolC4t23745H' => 'bol', 'BolC4t24575H' => 'bol', 'BolC4t25475H' => 'bol', 'BolC4t27321H' => 'bol', 'BolC4t28773H' => 'bol', 'BolC6t38011H' => 'bol', 'BolC8t50488H' => 'bol', 'BolC8t51338H' => 'bol', 'BolC8t51341H' => 'bol', 'BraA02t05801Z' => 'bra', 'BraA03t10490Z' => 'bra', 'BraA04t16310Z' => 'bra', 'BraA04t17749Z' => 'bra', 'BraA04t18937Z' => 'bra', 'BraA07t29630Z' => 'bra', 'BraA09t40117Z' => 'bra', 'BraA09t40118Z' => 'bra', 'BraA09t40879Z' => 'bra', 'C01p33370' => 'bna', 'C02p12600' => 'bna', 'C03p13840' => 'bna', 'C03p31010' => 'bna', 'C04p30410' => 'bna', 'C04p39030' => 'bna', 'C04p57950' => 'bna', 'C06p28420' => 'bna', 'C08p28860' => 'bna', 'C08p37580' => 'bna', 'CAN.G1013.8' => 'can', 'CAN.G1062.1' => 'can', 'CAN.G1209.26' => 'can', 'CAN.G382.4' => 'can', 'CAN.G382.5' => 'can', 'CAN.G418.10' => 'can', 'CAN.G472.3' => 'can', 'CAN.G484.43' => 'can', 'CAN.G687.7' => 'can', 'CAN.G687.8' => 'can', 'CAN.G786.20' => 'can', 'CAN.G822.6' => 'can', 'CANSAT25G1519' => 'cansat', 'CANSAT56G1641' => 'cansat', 'CANSAT56G2385' => 'cansat', 'CANSAT56G3874' => 'cansat', 'CANSAT78G2157' => 'cansat', 'CANSAT80G1488' => 'cansat', 'CARHR121880' => 'chi', 'CARHR121890' => 'chi', 'CARHR143050' => 'chi', 'CARHR154860' => 'chi', 'CARHR163420' => 'chi', 'CARHR163430' => 'chi', 'CARHR173100' => 'chi', 'CARHR285630' => 'chi', 'Carub.0004s0976' => 'cru', 'Carub.0004s3038' => 'cru', 'Carub.0005s1224' => 'cru', 'Carub.0005s2010' => 'cru', 'Carub.0005s2949' => 'cru', 'Carub.0008s1995' => 'cru', 'Ca_01337_v3' => 'car', 'Ca_09594_v3' => 'car', 'Ca_10336_v3' => 'car', 'Ca_19182_v3' => 'car', 'Ca_21487_v3' => 'car', 'CBR_g11144' => 'cbr', 'CBR_g11148' => 'cbr', 'CBR_g8574' => 'cbr', 'Cc01_g12580' => 'ccan', 'Cc01_g20830' => 'ccan', 'Cc02_g08080' => 'ccan', 'Cc03_g01720' => 'ccan', 'Cc03_g01730' => 'ccan', 'Cc06_g03150' => 'ccan', 'CDE01G0520' => 'cde', 'CDE02G3906' => 'cde', 'CDE09G0443' => 'cde', 'CDE09G0520' => 'cde', 'CDE09G1255' => 'cde', 'CDE12G0052' => 'cde', 'Cfa001499' => 'cfa', 'Cfa005913' => 'cfa', 'Cfa011470' => 'cfa', 'Cfa015399' => 'cfa', 'Cfa017450' => 'cfa', 'Ciclev10004959m.g' => 'ccl', 'Ciclev10011665m.g' => 'ccl', 'Ciclev10020167m.g' => 'ccl', 'Ciclev10028768m.g' => 'ccl', 'Ciclev10031983m.g' => 'ccl', 'CiPaw.01G147200' => 'cil', 'CiPaw.01G284600' => 'cil', 'CiPaw.02G081800' => 'cil', 'CiPaw.02G182800' => 'cil', 'CiPaw.07G109000' => 'cil', 'CiPaw.08G095400' => 'cil', 'CiPaw.09G187100' => 'cil', 'CiPaw.10G141300' => 'cil', 'CiPaw.13G097300' => 'cil', 'ClCG06G005060' => 'cla', 'ClCG07G003360' => 'cla', 'ClCG09G020020' => 'cla', 'ClCG10G010930' => 'cla', 'ClCG10G020840' => 'cla', 'COL.COLO4_06937' => 'col', 'COL.COLO4_09160' => 'col', 'COL.COLO4_13844' => 'col', 'COL.COLO4_14981' => 'col', 'COL.COLO4_18475' => 'col', 'COL.COLO4_23346' => 'col', 'Cpa.g.sc1.388' => 'cpa', 'Cpa.g.sc114.6' => 'cpa', 'Cpa.g.sc190.9' => 'cpa', 'Cpa.g.sc9.262' => 'cpa', 'Cre03.g169400' => 'cre', 'CsaV3_3G035180' => 'csa', 'CsaV3_4G000820' => 'csa', 'CsaV3_5G008090' => 'csa', 'CsaV3_5G026440' => 'csa', 'CsaV3_6G023940' => 'csa', 'CsaV3_6G023950' => 'csa', 'CsaV3_6G024100' => 'csa', 'CsaV3_UNG044310' => 'csa', 'CsaV3_UNG078600' => 'csa', 'CsaV3_UNG090700' => 'csa', 'CsaV3_UNG225760' => 'csa', 'CSS0005324' => 'camsi', 'CSS0008132' => 'camsi', 'CSS0013645' => 'camsi', 'CSS0022545' => 'camsi', 'CSS0025388' => 'camsi', 'CSS0029710' => 'camsi', 'CSS0030745' => 'camsi', 'CSS0037477' => 'camsi', 'CSS0042718' => 'camsi', 'CSS0043285' => 'camsi', 'DCAR_002470' => 'dca', 'DCAR_002833' => 'dca', 'DCAR_005312' => 'dca', 'DCAR_014941' => 'dca', 'DCAR_027066' => 'dca', 'DCAR_027650' => 'dca', 'DCAR_030519' => 'dca', 'Dinv19693' => 'din', 'Dinv25996' => 'din', 'Dinv29762' => 'din', 'Dinv31440' => 'din', 'Dinv31899' => 'din', 'Dinv32872' => 'din', 'Dinv35661' => 'din', 'Dinv37221' => 'din', 'Duzib052G0721' => 'dzi', 'Duzib093G0442' => 'dzi', 'Duzib106G1965' => 'dzi', 'Duzib128G1244' => 'dzi', 'Duzib133G1284' => 'dzi', 'Duzib138G1329' => 'dzi', 'Duzib151G0838' => 'dzi', 'Duzib168G0875' => 'dzi', 'Duzib170G1010' => 'dzi', 'Duzib211G0194' => 'dzi', 'ECA233G0225' => 'eca', 'ECA233G4774' => 'eca', 'ECA236G1185' => 'eca', 'ECA236G4883' => 'eca', 'ECA238G2188' => 'eca', 'ECA238G3310' => 'eca', 'ECA246G0774' => 'eca', 'ECA248G3345' => 'eca', 'EL10Ac7g15981' => 'bvu', 'EL10Ac7g17304' => 'bvu', 'EL10Ac7g17469' => 'bvu', 'Eucgr.A01221' => 'egr', 'Eucgr.B00451' => 'egr', 'Eucgr.G02921' => 'egr', 'Eucgr.H01112' => 'egr', 'Eucgr.H03936' => 'egr', 'Eucgr.J00040' => 'egr', 'FAN01G0625' => 'fan', 'FAN01G3137' => 'fan', 'FAN02G3992' => 'fan', 'FAN03G1241' => 'fan', 'FAN05G4578' => 'fan', 'FAN06G3454' => 'fan', 'FAN06G4919' => 'fan', 'FAN07G1105' => 'fan', 'FAN09G0094' => 'fan', 'FAN09G3537' => 'fan', 'FAN10G2438' => 'fan', 'FAN12G2181' => 'fan', 'FAN12G3946' => 'fan', 'FAN14G0467' => 'fan', 'FAN15G1683' => 'fan', 'FAN17G2135' => 'fan', 'FAN18G0431' => 'fan', 'FAN19G0174' => 'fan', 'FAN20G1356' => 'fan', 'FAN21G3092' => 'fan', 'FAN23G0530' => 'fan', 'FAN23G0686' => 'fan', 'FAN24G3298' => 'fan', 'FAN27G2009' => 'fan', 'FvH4_1g22830' => 'fve', 'FvH4_1g22850' => 'fve', 'FvH4_2g25720' => 'fve', 'FvH4_3g35550' => 'fve', 'FvH4_4g18410' => 'fve', 'FvH4_6g14640' => 'fve', 'FvH4_6g23040' => 'fve', 'FvH4_7g22040' => 'fve', 'Glyma.02G018000' => 'gma', 'Glyma.03G214700' => 'gma', 'Glyma.07G246600' => 'gma', 'Glyma.10G018400' => 'gma', 'Glyma.10G045800' => 'gma', 'Glyma.11G141200' => 'gma', 'Glyma.11G141300' => 'gma', 'Glyma.12G064600' => 'gma', 'Glyma.12G064700' => 'gma', 'Glyma.12G143400' => 'gma', 'Glyma.12G143501' => 'gma', 'Glyma.13G133800' => 'gma', 'Glyma.13G334500' => 'gma', 'Glyma.14G108851' => 'gma', 'Glyma.15G040000' => 'gma', 'Glyma.17G027300' => 'gma', 'Glyma.19G211300' => 'gma', 'Gohir.A01G219100' => 'ghi', 'Gohir.A02G050000' => 'ghi', 'Gohir.A03G040100' => 'ghi', 'Gohir.A04G078700' => 'ghi', 'Gohir.A05G097200' => 'ghi', 'Gohir.A05G349750' => 'ghi', 'Gohir.A08G076100' => 'ghi', 'Gohir.A10G216100' => 'ghi', 'Gohir.A11G114600' => 'ghi', 'Gohir.A12G130400' => 'ghi', 'Gohir.D01G208200' => 'ghi', 'Gohir.D02G055100' => 'ghi', 'Gohir.D03G127900' => 'ghi', 'Gohir.D04G062650' => 'ghi', 'Gohir.D04G117900' => 'ghi', 'Gohir.D05G097300' => 'ghi', 'Gohir.D08G085500' => 'ghi', 'Gohir.D10G225100' => 'ghi', 'Gohir.D11G119700' => 'ghi', 'Gohir.D12G134200' => 'ghi', 'Gorai.002G253300' => 'gra', 'Gorai.003G134600' => 'gra', 'Gorai.004G090000' => 'gra', 'Gorai.005G061000' => 'gra', 'Gorai.007G128200' => 'gra', 'Gorai.008G145200' => 'gra', 'Gorai.009G100900' => 'gra', 'Gorai.009G422900' => 'gra', 'Gorai.011G256100' => 'gra', 'Gorai.012G070000' => 'gra', 'GSVIVG01016574001' => 'vvi', 'GSVIVG01025003001' => 'vvi', 'GSVIVG01025596001' => 'vvi', 'GSVIVG01025597001' => 'vvi', 'GSVIVG01028014001' => 'vvi', 'GSVIVG01035142001' => 'vvi', 'HanXRQChr01g0018651' => 'han', 'HanXRQChr02g0044511' => 'han', 'HanXRQChr05g0132651' => 'han', 'HanXRQChr06g0163791' => 'han', 'HanXRQChr08g0220511' => 'han', 'HanXRQChr09g0276911' => 'han', 'HanXRQChr10g0319341' => 'han', 'HanXRQChr11g0349471' => 'han', 'HanXRQChr12g0382701' => 'han', 'HanXRQChr13g0399181' => 'han', 'HanXRQChr14g0453831' => 'han', 'HanXRQChr14g0453851' => 'han', 'HanXRQChr17g0538771' => 'han', 'Haze_01184' => 'cav', 'Haze_04937' => 'cav', 'Haze_05546' => 'cav', 'Haze_17042' => 'cav', 'Haze_20715' => 'cav', 'Haze_24056' => 'cav', 'Haze_27182' => 'cav', 'Hma1.2p1_0350F.1_g132590' => 'hma', 'Hma1.2p1_0491F.1_g164550' => 'hma', 'Hma1.2p1_0494F.1_g165170' => 'hma', 'Hma1.2p1_0533F.1_g173540' => 'hma', 'HPP92_000713' => 'vpl', 'HPP92_001314' => 'vpl', 'HPP92_001315' => 'vpl', 'HPP92_001351' => 'vpl', 'HPP92_001352' => 'vpl', 'HPP92_001366' => 'vpl', 'HPP92_001367' => 'vpl', 'HPP92_001448' => 'vpl', 'HPP92_002148' => 'vpl', 'HPP92_002149' => 'vpl', 'HPP92_019810' => 'vpl', 'Hund04985' => 'sun', 'Hund05427' => 'sun', 'Hund18925' => 'sun', 'Lalb_Chr01g0003751' => 'lal', 'Lalb_Chr01g0019141' => 'lal', 'Lalb_Chr01g0019151' => 'lal', 'Lalb_Chr02g0143271' => 'lal', 'Lalb_Chr02g0143281' => 'lal', 'Lalb_Chr02g0153291' => 'lal', 'Lalb_Chr02g0153301' => 'lal', 'Lalb_Chr03g0026771' => 'lal', 'Lalb_Chr06g0163531' => 'lal', 'Lalb_Chr06g0171111' => 'lal', 'Lalb_Chr07g0177801' => 'lal', 'Lalb_Chr07g0177811' => 'lal', 'Lalb_Chr15g0083441' => 'lal', 'Lalb_Chr18g0046961' => 'lal', 'Lalb_Chr18g0046971' => 'lal', 'Lalb_Chr18g0046981' => 'lal', 'Lalb_Chr18g0046991' => 'lal', 'Lalb_Chr18g0051581' => 'lal', 'Lalb_Chr19g0137731' => 'lal', 'Lalb_Chr19g0137741' => 'lal', 'Lalb_Chr20g0113091' => 'lal', 'Lalb_Chr20g0113101' => 'lal', 'Lalb_Chr24g0394221' => 'lal', 'Lj1A157T40' => 'lonja', 'Lj1A24T67' => 'lonja', 'Lj1A935T51' => 'lonja', 'Lj2A102T69' => 'lonja', 'Lj2A1194G51' => 'lonja', 'Lj2C1057T19' => 'lonja', 'Lj3A822T34' => 'lonja', 'Lj3C973T15' => 'lonja', 'Lj3g0024563' => 'lja', 'Lj4g0011937' => 'lja', 'Lj5g0008814' => 'lja', 'Lj5g0010631' => 'lja', 'Lsat_1_v5_gn_1_55141' => 'lsa', 'Lsat_1_v5_gn_2_111261' => 'lsa', 'Lsat_1_v5_gn_3_24780' => 'lsa', 'Lsat_1_v5_gn_6_32921' => 'lsa', 'Lsat_1_v5_gn_6_95381' => 'lsa', 'Lsat_1_v5_gn_6_95441' => 'lsa', 'Lsat_1_v5_gn_8_163520' => 'lsa', 'Lsat_1_v5_gn_8_163700' => 'lsa', 'Lsat_1_v5_gn_8_16781' => 'lsa', 'Lsat_1_v5_gn_8_77981' => 'lsa', 'Lsat_1_v5_gn_9_5660' => 'lsa', 'Manes.01G219000' => 'mes', 'Manes.04G032900' => 'mes', 'Manes.05G062100' => 'mes', 'Manes.08G074700' => 'mes', 'Manes.10G032500' => 'mes', 'Manes.11G132500' => 'mes', 'Mapoly0055s0105' => 'mpo', 'Mapoly0073s0028' => 'mpo', 'MBI04_g22383_MAGBIO' => 'mbi', 'MBI05_g10861_MAGBIO' => 'mbi', 'MBI14_g11679_MAGBIO' => 'mbi', 'MBI14_g26672_MAGBIO' => 'mbi', 'MBI17_g19034_MAGBIO' => 'mbi', 'MBI18_g06023_MAGBIO' => 'mbi', 'MBI19_g25273_MAGBIO' => 'mbi', 'MCO10G218' => 'mco', 'MD00G1128000' => 'mdo', 'MD01G1125200' => 'mdo', 'MD03G1096800' => 'mdo', 'MD03G1288200' => 'mdo', 'MD04G1118200' => 'mdo', 'MD07G1194900' => 'mdo', 'MD11G1143300' => 'mdo', 'MD11G1309900' => 'mdo', 'MD12G1133600' => 'mdo', 'MD16G1167000' => 'mdo', 'Medtr1g067530' => 'mtr', 'Medtr1g088480' => 'mtr', 'Medtr2g096660' => 'mtr', 'Medtr4g063600' => 'mtr', 'Medtr4g120030' => 'mtr', 'MELO3C009287.2' => 'cme', 'MELO3C017955.2' => 'cme', 'MELO3C021322.2' => 'cme', 'MELO3C023858.2' => 'cme', 'MELO3C025446.2' => 'cme', 'Migut.D00219' => 'egut', 'Migut.G00143' => 'egut', 'Migut.J00383' => 'egut', 'Migut.J00940' => 'egut', 'Migut.J00943' => 'egut', 'Migut.L01181' => 'egut', 'Migut.L01631' => 'egut', 'MSTRG.10104' => 'ama', 'MSTRG.17407' => 'ama', 'MSTRG.19471' => 'ama', 'MSTRG.21634' => 'ama', 'MSTRG.26747' => 'ama', 'MSTRG.26748' => 'ama', 'MSTRG.760' => 'ama', 'MSTRG.7740' => 'ama', 'Nitab4.5_0000570g0240' => 'nta', 'Nitab4.5_0000610g0080' => 'nta', 'Nitab4.5_0000643g0050' => 'nta', 'Nitab4.5_0000725g0140' => 'nta', 'Nitab4.5_0001831g0130' => 'nta', 'Nitab4.5_0001879g0080' => 'nta', 'Nitab4.5_0002761g0040' => 'nta', 'Nitab4.5_0002818g0040' => 'nta', 'Nitab4.5_0002820g0090' => 'nta', 'Nitab4.5_0003466g0030' => 'nta', 'Nitab4.5_0003782g0020' => 'nta', 'Nitab4.5_0003865g0090' => 'nta', 'Nitab4.5_0003969g0040' => 'nta', 'Nitab4.5_0004367g0020' => 'nta', 'Nitab4.5_0004617g0020' => 'nta', 'Nitab4.5_0005362g0060' => 'nta', 'Nitab4.5_0005525g0050' => 'nta', 'Nitab4.5_0006342g0030' => 'nta', 'Nitab4.5_0008047g0030' => 'nta', 'Nitab4.5_0008102g0010' => 'nta', 'Nn2g10521' => 'nnu', 'Nn2g12808' => 'nnu', 'Nn2g12855' => 'nnu', 'Nn3g21490' => 'nnu', 'Oeu010668.1' => 'oeu', 'Oeu010669.1' => 'oeu', 'Oeu016797.1' => 'oeu', 'Oeu023871.2' => 'oeu', 'Oeu033240.1' => 'oeu', 'Oeu035682.1' => 'oeu', 'Oeu038983.3' => 'oeu', 'Oeu046679.1' => 'oeu', 'Oeu048337.1' => 'oeu', 'Oeu049190.1' => 'oeu', 'Oeu059703.1' => 'oeu', 'Oeu060061.1' => 'oeu', 'Os01g0315800' => 'osa', 'Os01g0837300' => 'osa', 'Os03g0278000' => 'osa', 'Os03g0280800' => 'osa', 'Os05g0363200' => 'osa', 'Os07g0674100' => 'osa', 'Peaxi162Scf00001g04320' => 'pax', 'Peaxi162Scf00015g01516' => 'pax', 'Peaxi162Scf00017g01723' => 'pax', 'Peaxi162Scf00039g00617' => 'pax', 'Peaxi162Scf00060g00020' => 'pax', 'Peaxi162Scf00189g00087' => 'pax', 'Peaxi162Scf00189g00814' => 'pax', 'Peaxi162Scf00246g01120' => 'pax', 'Peaxi162Scf00406g00236' => 'pax', 'Peaxi162Scf00646g00318' => 'pax', 'PGR004G2387' => 'pgr', 'PGR031G2934' => 'pgr', 'PGR044G0056' => 'pgr', 'PGR044G0842' => 'pgr', 'PGR119G2161' => 'pgr', 'PGSC0003DMG400000404' => 'stu', 'PGSC0003DMG400004632' => 'stu', 'PGSC0003DMG400007063' => 'stu', 'PGSC0003DMG400017601' => 'stu', 'PGSC0003DMG400023524' => 'stu', 'PGSC0003DMG400027735' => 'stu', 'PGSC0003DMG401011335' => 'stu', 'PGSC0003DMG401011377' => 'stu', 'PGSC0003DMG402011335' => 'stu', 'PGSC0003DMG402011377' => 'stu', 'PGSC0003DMG402023929' => 'stu', 'Phvul.001G207400' => 'pvu', 'Phvul.003G096800' => 'pvu', 'Phvul.007G146300' => 'pvu', 'Phvul.011G065700' => 'pvu', 'Phvul.011G065800' => 'pvu', 'Phvul.L001841' => 'pvu', 'Phvul.L004043' => 'pvu', 'Potri.001G237200' => 'ptr', 'Potri.002G204400' => 'ptr', 'Potri.006G214000' => 'ptr', 'Potri.008G053100' => 'ptr', 'Potri.010G207200' => 'ptr', 'Potri.014G129200' => 'ptr', 'Potri.016G080500' => 'ptr', 'Pp3c10_11730' => 'ppa', 'Pp3c10_11740' => 'ppa', 'Pp3c10_16160' => 'ppa', 'Pp3c14_15630' => 'ppa', 'Pp3c15_6920' => 'ppa', 'Pp3c4_23720' => 'ppa', 'PRCOL_00003082' => 'pco', 'Prupe.1G134000' => 'ppe', 'Prupe.2G232500' => 'ppe', 'Prupe.6G081100' => 'ppe', 'Prupe.6G247300' => 'ppe', 'Prupe.8G261400' => 'ppe', 'Psat4g026720' => 'psa', 'Psat5g282880' => 'psa', 'Psat6g066200' => 'psa', 'Psat6g066240' => 'psa', 'Psat6g165480' => 'psa', 'Psat7g217760' => 'psa', 'PSO170G2637' => 'pso', 'PSO210G4989' => 'pso', 'PSO339G1377' => 'pso', 'PSO339G2297' => 'pso', 'PSO339G3606' => 'pso', 'PSO384G1122' => 'pso', 'PSO384G4629' => 'pso', 'PSO407G0314' => 'pso', 'PSO648G0086' => 'pso', 'PSO832G1221' => 'pso', 'QL01p032856' => 'qlo', 'QL06p009642' => 'qlo', 'QL07p046562' => 'qlo', 'QL08p059108' => 'qlo', 'QL12p028482' => 'qlo', 'RcHm_v2.0_Chr1g0366401' => 'rch', 'RcHm_v2.0_Chr2g0117191' => 'rch', 'RcHm_v2.0_Chr3g0467761' => 'rch', 'RcHm_v2.0_Chr4g0422861' => 'rch', 'RcHm_v2.0_Chr5g0063761' => 'rch', 'RcHm_v2.0_Chr6g0294001' => 'rch', 'RcHm_v2.0_Chr6g0294011' => 'rch', 'Rhsim01G0225700' => 'rsi', 'Rhsim01G0285000' => 'rsi', 'Rhsim03G0132500' => 'rsi', 'Rhsim04G0224300' => 'rsi', 'Rhsim05G0186400' => 'rsi', 'Rhsim09G0164900' => 'rsi', 'Rhsim13G0010200' => 'rsi', 'Sabra02G0154800' => 'sbr', 'Sabra06G0164900' => 'sbr', 'Sabra08G0038200' => 'sbr', 'Sabra10G0160000' => 'sbr', 'Sabra14G0096000' => 'sbr', 'Sabra16G0088700' => 'sbr', 'SalBow2G0818' => 'sbo', 'SalBow3G3551' => 'sbo', 'SalBow4G3028' => 'sbo', 'SalBow6G0543' => 'sbo', 'SalBow6G6570' => 'sbo', 'SalBow8G0230' => 'sbo', 'Sc01g0003850' => 'sci', 'Sc05g0003860' => 'sci', 'Sc21g0005620' => 'sci', 'Sed0000352' => 'sed', 'Sed0002085' => 'sed', 'Sed0004626' => 'sed', 'Sed0005544' => 'sed', 'Sed0010432' => 'sed', 'Sed0011682' => 'sed', 'Sed0012443' => 'sed', 'Sed0015160' => 'sed', 'Sed0019157' => 'sed', 'Sed0024524' => 'sed', 'SEGI_03433' => 'sgi', 'SEGI_16484' => 'sgi', 'SEGI_26335' => 'sgi', 'SEGI_31450' => 'sgi', 'SEGI_34730' => 'sgi', 'SGA_v2.0_scaffold126G33852' => 'sas', 'SGA_v2.0_scaffold16G07801' => 'sas', 'SGA_v2.0_scaffold1G00365' => 'sas', 'SGA_v2.0_scaffold1G00366' => 'sas', 'SGA_v2.0_scaffold2G01392' => 'sas', 'SGA_v2.0_scaffold35G14201' => 'sas', 'SGA_v2.0_scaffold67G22618' => 'sas', 'SGA_v2.0_scaffold91G28091' => 'sas', 'SGA_v2.0_scaffold94G28633' => 'sas', 'SGA_v2.0_scaffold97G29145' => 'sas', 'SGA_v2.0_scaffold982G53766' => 'sas', 'SMO114G0114' => 'smo', 'SMO119G0046' => 'smo', 'SMO147G0420' => 'smo', 'SMO358G0688' => 'smo', 'Solyc01g066700.4' => 'sly', 'Solyc01g066710.4' => 'sly', 'Solyc04g011400.3' => 'sly', 'Solyc05g054590.4' => 'sly', 'Solyc09g005470.3' => 'sly', 'Solyc09g005530.3' => 'sly', 'Solyc09g005810.4' => 'sly', 'Solyc09g075120.3' => 'sly', 'Solyc10g085920.3' => 'sly', 'Solyc11g066150.3' => 'sly', 'Solyc12g099480.2' => 'sly', 'Sopen01g028320' => 'spe', 'Sopen04g005590' => 'spe', 'Sopen05g033070' => 'spe', 'Sopen09g001400' => 'spe', 'Sopen09g001440' => 'spe', 'Sopen09g001700' => 'spe', 'Sopen09g029930' => 'spe', 'Sopen09g029940' => 'spe', 'Sopen10g035300' => 'spe', 'Sopen11g025920' => 'spe', 'Sopen12g034150' => 'spe', 'Sp4g11610' => 'spa', 'Sp4g29590' => 'spa', 'Sp5g00680' => 'spa', 'Sp5g08810' => 'spa', 'Sp5g15240' => 'spa', 'Sp6g20960' => 'spa', 'TAR362G0611' => 'tar', 'TAR365G0347' => 'tar', 'TAR369G0164' => 'tar', 'TAR623G0740' => 'tar', 'TAR633G0571' => 'tar', 'TAR633G0896' => 'tar', 'TAR633G1203' => 'tar', 'TAR633G2311' => 'tar', 'TAR636G1283' => 'tar', 'TAR636G1332' => 'tar', 'TAR636G2239' => 'tar', 'TAR636G2568' => 'tar', 'THA.LOC104798839' => 'tha', 'THA.LOC104799450' => 'tha', 'THA.LOC104800000' => 'tha', 'THA.LOC104800650' => 'tha', 'THA.LOC104802173' => 'tha', 'THA.LOC104805404' => 'tha', 'THA.LOC104807015' => 'tha', 'THA.LOC104810790' => 'tha', 'THA.LOC104827551' => 'tha', 'Thecc.01G300400' => 'tca', 'Thecc.04G286700' => 'tca', 'Thecc.05G047100' => 'tca', 'Thecc.09G325300' => 'tca', 'Thecc.10G046200' => 'tca', 'Thhalv10001451m.g' => 'esa', 'Thhalv10002602m.g' => 'esa', 'Thhalv10005973m.g' => 'esa', 'Thhalv10010296m.g' => 'esa', 'Thhalv10014020m.g' => 'esa', 'Thhalv10016891m.g' => 'esa', 'TPR.G10203' => 'tpr', 'TPR.G11111' => 'tpr', 'TPR.G29930' => 'tpr', 'TPR.G3179' => 'tpr', 'TPR.G33999' => 'tpr', 'TPR.G34279' => 'tpr', 'TPR.G553' => 'tpr', 'TWI09G1645' => 'twi', 'TWI23G1039' => 'twi', 'TWI31G0656' => 'twi', 'TWI53G1895' => 'twi', 'TWI59G0271' => 'twi', 'TWI74G1111' => 'twi', 'TWI75G1429' => 'twi', 'TWI77G0464' => 'twi', 'TWI77G0800' => 'twi', 'TWI79G0210' => 'twi', 'unitig_26.g10171' => 'ugi', 'unitig_578.g15923' => 'ugi', 'unitig_578.g16047' => 'ugi', 'unitig_578.g16048' => 'ugi', 'unitig_8.g3280' => 'ugi', 'unitig_8.g3707' => 'ugi', 'unitig_8.g3708' => 'ugi', 'vmacro02451' => 'vma', 'vmacro07163' => 'vma', 'vmacro08168' => 'vma', 'vmacro14531' => 'vma', 'vmacro15011' => 'vma', 'vmacro20106' => 'vma', 'VMungo0251G3158' => 'vmu', 'VMungo0720G0214' => 'vmu', 'VMungo0720G2398' => 'vmu', 'VMungo0720G2809' => 'vmu', 'VMungo1080G1699' => 'vmu', 'VMungo1080G1896' => 'vmu', 'VMungo1127G1283' => 'vmu', 'VMungo1127G1911' => 'vmu', 'VMungo1215G0553' => 'vmu', 'VMungo1383G3711' => 'vmu', 'Zm00001eb012580' => 'zma', 'Zm00001eb038440' => 'zma', 'Zm00001eb056090' => 'zma', 'Zm00001eb130620' => 'zma', 'Zm00001eb148640' => 'zma', 'Zm00001eb271670' => 'zma', 'Zm00001eb285660' => 'zma', 'Zm00001eb289340' => 'zma', 'Zm00001eb315590' => 'zma', 'Zm00001eb346580' => 'zma', 'Zm00001eb368100' => 'zma', 'Zm00001eb397360' => 'zma', 'Zm00001eb397580' => 'zma', 'Zm00001eb431770' => 'zma' ) $gf_id = 'HOM05D000739' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000739' ) $data_identifier = 'HOM05D000739' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 3, 'lal' => (int) 23, 'lonja' => (int) 8, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 20, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 11, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431770' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1